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VIBE
The INCOGEN Visual Integrated Bioinformatics Environment (VIBE) is a state-of-the-art, drag-and-drop analysis workflow management environment. INCOGEN has been recognized as a global leader in the field of workflow management for several years and VIBE represents the premier software application in this area.

The VIBE system can interface with a variety of environments, including high throughput platforms such as Sun Microsystem's Grid Engine. The rich visualization and data mining environments in combination with the sophisticated server architecture offer the life science researcher a powerful system for data analysis, mining and knowledge discovery. The new VIBE Software Development Kit (SDK) combines the rich and powerful VIBE environment with user-level extensibility.

Features

  • Visual workflow creation, customization, and management
  • Robust toolkits
  • Efficient drag-and-drop analysis pipeline construction
  • Visual implementation of algorithms
  • Data filtering on simple or complex criteria
  • Distributed, multi-user support
  • Interactive or batch mode module execution
  • User editable representation of pipelines in XML
  • State-of-the-art, interactive visualization tools
  • Intuitive, user-friendly data representation
  • Archive workflows and results for future use
New in VIBE 3.0
  • New Sun hardware bundles!
  • Visual, magnetic workspace grid for organization of modules
  • Automatic pipeline layout
  • Module registry to let users choose "next step" modules
  • Printing and Exporting of graphical views
  • Expanded Operating System support - Apple OS X (Panther)
  • Video tutorials to learn VIBE quickly

VIBE SDK
The VIBE Software Development Kit (SDK) extends the existing powerful and user-friendly bioinformatics visual programming environment of the INCOGEN VIBE software by providing an integration Application Programming Interface (iAPI) that allows users to integrate in-house, third-party analysis tools and new data types. VIBE SDK is a flexible environment that builds on the functionality and features of VIBE. In addition to the suite of analysis utilities available through various VIBE toolkits and the capabilities of the VIBE framework, bioinformaticists gain the ability to integrate their own algorithms or third-party tools, whether installed locally or remotely. Once a new tool has been integrated, users can share the integration elements with other users of the same tool, following a write once, integrate everywhere philosophy of pluggable software components. VIBE SDK unifies your tools and process into one easy-to-use environment.

Features

  • Integration Application Programming Interface (iAPI)
  • Extensive guides and documentation
  • Write once, integrate everywhere philosophy of "pluggable" components
  • Module configurations via external XML files - often that is all that is required to integrate a new tool
  • Scaleable, flexible, and distributable configurations
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Screenshots
Click to view: SIM Viewer SIM Viewer
Click to view: FASTA Viewer FASTA Viewer
Click to view: Pipeline Execution on Windows Pipeline Execution on Windows

Documents
Click to view: VIBE MS Case Study (569 KB)
(PDF format) VIBE MS Case Study (569 KB)
(PDF format)
Click to view: Frequently Asked Questions (14 KB)
(HTML format) Frequently Asked Questions (14 KB)
(HTML format)
Click to view: VIBE NIAID Press Release (5 KB)
(HTML format) VIBE NIAID Press Release (5 KB)
(HTML format)
Click to view: VIBE 3.0 Whitepaper (797 KB)
(PDF format) VIBE 3.0 Whitepaper (797 KB)
(PDF format)

Product Demo
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System Requirements

Workgroup Edition:

  • Workstation
    • 1GHz CPU
    • 512 MB RAM
    • 50MB available Hard Disk space
    • 1024x768 screen resolution
    • Network access
    • Operating System:
      • Windows 2000/XP
      • Linux
      • Apple OS X (Panther or newer)
  • Server
    • 1GHz CPU
    • 512MB RAM (1GB+ highly recommended)
    • 55 GB available Hard Drive space (or less in some configurations)
    • Perl 5.6.1+
    • Network access
    • Operating System
      • Linux
      • Solaris 8+
      • Apple OS X (Panther or newer on G5 hardware)

Desktop Edition:

  • Workstation
    • 1GHz CPU
    • 512MB RAM (1GB+ highly recommended)
    • 55 GB available Hard Drive space (or less in some configurations)
    • 1024x768 screen resolution
    • Perl 5.6.1+
    • Network access
    • Operating System
      • Linux
      • Apple OS X (Panther or newer on G5 hardware)


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